Cgmlst Python Packages

chewbbaca

BSR-Based Allele Calling Algorithm

sistr-cmd

SISTR (Salmonella In Silico Typing Resource) command-line tool

chewbbaca-nserver

BSR-Based Allele Calling Algorithm

sistr-cmd-olc

Serovar predictions from Salmonella whole-genome sequence assemblies by determination of antigen geneand cgMLST gene alleles using BLAST. Mash MinHash can also be used for serovar prediction.

taranys

cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch.