PyRank

Cfdna Python Packages

Python packages with the GitHub topic cfdna. Sorted by monthly downloads, with stars and forks.
epifluidlab
finaletoolkit

FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.

2K 41 17
ChaorongC
mesa-cfdna

A flexible and sensitive method for capturing and integrating multimodal epigenetic information from cell-free DNA (cfDNA) using a single experimental assay.

341 3 1
BesenbacherLab
lionheart

LIONHEART detects cancer from whole genome sequenced plasma cell-free DNA.

304 15 3
BesenbacherLab
cfdnalab

Ultra-fast command line tools for extracting bias-corrected fragmentation patterns from cell-free DNA

291 6 0
schwarzlab-ccb
pyfraglib

cfDNA fragmentomics platform

180 2 0
ShujiaHuang
basevar

This is the official development repository for BaseVar, which call variants for large-scale ultra low-pass (<1.0x) WGS data, especially for NIPT data

73 28 8