Cell Python Packages

bluecellulab

Biologically detailed neural network simulations and analysis API

gridengine-framework

grid-engine is a tool for generating and manipulating 2d landscapes.

cellector

A pipeline and GUI for determining which ROIs match features in a fluorescence image.

a-pandas-ex-obj-into-cell

Puts objects into cells / columns of a Pandas Dataframe

ihcinfer

Fast patch-based immunohistochemistry (IHC) inference library for whole-slide images (SVS/KFB), powered by DeepLIIF

pytfm

2 dimensional particle image velocimetry, traction force microscopy and monolayer stress microscopy

ecdh

ElectroChemical Data Handling

biotracks

A repository for data package representation for cell tracking data

openmc-cell-segmenter

Segments cells into smaller cells. Useful for redefining geometry for cell based shutdown dose rate simulations.

xl-link

Excel speadsheets made easy through Pandas magic.

pygpseq

Python3 package to analyse GPSeq images and manage TIFF files.

ccapi

A Python Library to interact with the Cell Collective API v2