Cell Python Packages

bluecellulab

Biologically detailed neural network simulations and analysis API

gridengine-framework

grid-engine is a tool for generating and manipulating 2d landscapes.

cellector

A pipeline and GUI for determining which ROIs match features in a fluorescence image.

a-pandas-ex-obj-into-cell

Puts objects into cells / columns of a Pandas Dataframe

ccapi

Python API for Cell Collective

openmc-cell-segmenter

Segments cells into smaller cells. Useful for redefining geometry for cell based shutdown dose rate simulations.

pytfm

2 dimensional particle image velocimetry, traction force microscopy and monolayer stress microscopy

ecdh

ElectroChemical Data Handler

biotracks

A repository for data package representation for cell tracking data

pygpseq

Python3 package to analyse GPSeq images and manage TIFF files.

xl-link

Excel speadsheets made easy through Pandas magic.