Cell Type Annotation Python Packages

mllmcelltype

Cell type annotation for single-cell RNA-seq using multi-LLM consensus

llm-sc-curator

Data-centric marker distillation for zero-shot cell-type and spatial annotation with LLMs.

celltypepilot

Agent-native, local-first plugin for auditable single-cell annotation with governed evidence, contrastive review, conservative abstention, and human-reviewed draft outputs.

otmode

OTMODE: An Optimal Transport-Based Framework for Differential Feature Identification in Single-Cell Multi-Omics

azimuthpy

Python wrapper for Azimuth single-cell reference mapping: annotate cell types from AnnData using rpy2