Cell Tracking Python Packages

btrack

Bayesian multi-object tracking

napari-tmidas

A plugin for batch processing of confocal and whole-slide microscopy images of biological tissues

napari-arboretum

Track and lineage visualization with btrack and Napari :evergreen_tree:

napari-nuclephaser

A Napari plugin to detect and count nuclei on phase contrast images

cindra

Provides pipelines for processing neural imaging data and tracking Regions of Interest across multiple recordings.