Cell Tracking Python Packages

btrack

Bayesian multi-object tracking

napari-tmidas

Automated batch processing of cell and tissue microscopy image data in Napari

cindra

Provides pipelines for processing neural imaging data and tracking Regions of Interest across multiple recordings.

napari-nuclephaser

A Napari plugin for automated cell nuclei detection, cell proliferation & population growth analysis, and single-cell tracking in brightfield and fluorescence microscopy images

sam-spot

Generalized and streamlined image phenotyping of dynamic objects over time

napari-arboretum

Track graph and lineage tree visualization with napari