Cancer Research Python Packages

biomedical-ai-skills

AI agent skills for cancer biology and multi-omics research

bioconverge

Python framework for biological score integration, patient stratification, concordance analysis, archetype discovery, and validation-aware computational biology.

melinoe

A local-first, validity-aware workbench for reproducible multimodal cancer research

cancer-data

A unified downloader+preprocessor for cancer genomics datasets

acscend

Comprehensive Enumeration of Cancer Stem-like Cell Heterogeneity Using Deep Neural Network

cfdnalab

Ultra-fast command line tools for extracting bias-corrected fragmentation patterns from cell-free DNA

lyroi

nnU-Net-based Lymphoma Total Metabolic Tumor Volume Segmentation

cellpyability

Software for the automated analysis of in cellulo high-throughput drug screening

pycandi

CanDI - A global cancer data integrator

digipathai

Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay