Cancer Imaging Research Python Packages

glam-radiomics

Gray Level Affinity Metrics (GLAM)

mediml

Python Open-source package for medical images processing and radiomics features extraction.

collageradiomics

Python Implementation of the CoLlAGe radiomics descriptor. CoLlAGe captures subtle anisotropic differences in disease pathologies by measuring entropy of co-occurrences of voxel-level gradient orientations on imaging computed within a local neighborhood.

depalma-napari-omero

Napari user interface with connection to OMERO.

foundation-cancer-image-biomarker

[Nature Machine Intelligence 2024] Code and evaluation repository for the paper

spatial-lda

Probabilistic topic model for identifying cellular micro-environments.

medimage-pkg

Python Open-source package for medical images processing and radiomics features extraction.

pysera

PySERA – Open-Source Standardized Python Library for Automated, Scalable, and Reproducible Handcrafted and Deep Radiomics

pyradiomics-fix

Radiomics features library for python

pyradiomics-cuda

CUDA-accelerated fork of PyRadiomics - a Radiomics features library for python

mouselungseg

Lungs segmentation in mice CT scans

collageradiomicstypes

CoLliage Implementation

mousetumortrack

Tracking tumor nodules in mice CT scans.

collageradiomics-types

CoLliage Implementation

topology-radiomics

Topology Radiomics by INVENT and BRIC lab

pyradiomics-bhklab

Radiomics features library for python

collageradiomics-core

Python Implementation of the CoLlAGe radiomics descriptor. CoLlAGe captures subtle anisotropic differences in disease pathologies by measuring entropy of co-occurrences of voxel-level gradient orientations on imaging computed within a local neighborhood.

collageradiomicscli

Python Implementation of the CoLlAGe radiomics descriptor. CoLlAGe captures subtle anisotropic differences in disease pathologies by measuring entropy of co-occurrences of voxel-level gradient orientations on imaging computed within a local neighborhood.