PyRank

Cancer Imaging Research Python Packages

Python packages with the GitHub topic cancer-imaging-research. Sorted by relevance, with stars and monthly downloads.
ccipd
collageradiomics

Python Implementation of the CoLlAGe radiomics descriptor. CoLlAGe captures subtle anisotropic differences in disease pathologies by measuring entropy of co-occurrences of voxel-level gradient orientations on imaging computed within a local neighborhood.

3K 20 12
AIM-Harvard
foundation-cancer-image-biomarker

[Nature Machine Intelligence 2024] Code and evaluation repository for the paper

2K 132 18
MEDomicsLab
mediml

Python Open-source package for medical images processing and radiomics features extraction.

1K 8 2
calico
spatial-lda

Probabilistic topic model for identifying cellular micro-environments.

1K 28 12
MEDomics-UdeS
medimage-pkg

Python Open-source package for medical images processing and radiomics features extraction.

816 8 2
EPFL-Center-for-Imaging
depalma-napari-omero

Napari user interface with connection to OMERO.

790 2 1
radiuma-com
pysera

A Python library for radiomics feature extraction with multiprocessing support

413 24 4
EPFL-Center-for-Imaging
mouselungseg

Lungs segmentation in mice CT scans

391 0 0
Radiomics
pyradiomics-fix

Radiomics features library for python

301 1K 542
radxtools
collageradiomicstypes

CoLliage Implementation

268 20 12
AIM-Harvard
pyradiomics-cuda

CUDA-accelerated fork of PyRadiomics - a Radiomics features library for python

186 1K 542
EPFL-Center-for-Imaging
mousetumortrack

Tracking tumor nodules in mice CT scans.

167 0 0
AIM-Harvard
pyradiomics-bhklab

Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks. Support: https://discourse.slicer.org/c/community/radiomics

167 1K 542
radxtools
collageradiomics-types

CoLliage Implementation

156 20 12
ccipd
collageradiomics-core

Python Implementation of the CoLlAGe radiomics descriptor. CoLlAGe captures subtle anisotropic differences in disease pathologies by measuring entropy of co-occurrences of voxel-level gradient orientations on imaging computed within a local neighborhood.

149 20 12
Toth-Technology
topology-radiomics

Python implementation of topology descriptors which capture subtle sharpness and curvature differences along the surface of diseased pathologies on imaging.

130 9 3
radxtools
collageradiomicscli

Python Implementation of the CoLlAGe radiomics descriptor. CoLlAGe captures subtle anisotropic differences in disease pathologies by measuring entropy of co-occurrences of voxel-level gradient orientations on imaging computed within a local neighborhood.

112 20 12