PyRank

Calcium Imaging Python Packages

Python packages with the GitHub topic calcium-imaging. Sorted by relevance, with stars and monthly downloads.
inscopix
isx

Python API for interacting with Inscopix data.

4K 13 3
NiRuff
vineseg

"ViNe-Seg: A deep-learning tool for semi-automatic neural soma segmentation and subsequent analysis in a user-friendly interface"

2K 1 0
Aharoni-Lab
mio

miniscope I/O sdk

1K 11 3
neuroinformatics-unit
derotation

Derotate images acquired via multiphoton calcium imaging

504 17 3
kushalkolar
mesmerize

Platform for Calcium Imaging analysis. DEPRECATED.

443 62 13
oist
optinist

Calcium Imaging Pipeline Tool

382 49 15
Sun-Lab-NBB
cindra

Provides pipelines for processing neural imaging data and tracking Regions of Interest across multiple recordings.

372 0 0
neuroinformatics-unit
photon-mosaic

Automating calcium imaging analysis

369 20 4
nel-lab
mesmerize-core

High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn

313 68 19
hochbaumGroup
hnccorr

HNCcorr algorithm for neuron identification in calcium imaging datasets.

195 11 3
handejong
fipster

Build your own camera-based multi-fiber and multi-color fiber photometry (FIP) system!

105 2 0
SainsburyWellcomeCentre
stiminterp

Photostimulation artifact removal via interpolation

84 0 0
nel-lab
lbm-mc

High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn

78 68 19
AllenInstitute
neuroglia

scikit-learn compatible transformers for neural data science

70 36 7
aolsux
samuroi

Segmentation and Analysis of Multiple User-defined ROIs

48 17 7
nel-lab
lcp-mc

High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn

3 68 19