PyRank

Brain Python Packages

Python packages with the GitHub topic brain. Sorted by relevance, with stars and monthly downloads.
bids-standard
pybv

A lightweight I/O utility for the BrainVision data format, written in Python.

38K 24 13
brainglobe
brainglobe-atlasapi

A Python interface to access neuroanatomical atlases

16K 179 65
openbraininstitute
bluecellulab

Biologically detailed neural network simulations and analysis API

11K 4 2
adalca
neurite

Neural networks toolbox focused on medical image analysis

7K 375 77
FZJ-INM1-BDA
siibra

Software interfaces for interacting with brain atlases - Python client

6K 58 12
mne-tools
mne-lsl

A framework for real-time brain signal streaming with MNE-Python.

5K 83 35
brainglobe
bg-atlasapi

A Python interface to access neuroanatomical atlases

4K 179 65
brainglobe
brainreg

Automated 3D brain registration with support for multiple species and atlases.

4K 147 37
navis-org
fafbseg

Tools to work with the FlyWire connectome. Fully interoperable with navis.

3K 22 9
BrainLesion
brainles-preprocessing

preprocessing tools for multi-modal 3D brain imaging

2K 33 8
schlegelp
flybrains

Transforms for navis that enable mapping between different Drosophila template brains.

2K 19 3
BlueBrain
neurodamus

A BBP Simulation Control application for NEURON

1K 10 9
BlueBrain
brayns

Brayns Python API

911 305 47
MariusCausemann
brainseg-containers

A container based wrapper for brain segmentation tools

741 0 0
MIPLabCH
nigsp

A python library (and toolbox!) to run Graph Signal Processing on multimodal MRI data.

653 21 13
brainglobe
brainreg-napari

Multi-atlas whole-brain microscopy registration

638 16 5
abysslover
deepparcellation

DeepParcellation: deep learning for robust brain MRI parcellation of elderly East Asians

634 6 1
robertZaufall
mindm

Python library for interacting with local installed MindManager(tm) on Windows and MacOS platform.

602 5 0
brainspinner
cvasl

This is a repo for the Cerebrovascular Brain Age project

507 4 2
lightbluetitan
neurodatasets

The neurodatasets package provides a curated collection of neuroscience and brain-related datasets for data analysis, statistical modeling, and machine learning research. It includes datasets related to biomedical voice recordings, MRI brain imaging, Alzheimer's and Parkinson's disease biomarkers, epilepsy seizures, ADHD symptoms

488 3 0
fphammerle
freesurfer-surface

Python Library to Read and Write Surface Files in Freesurfer's TriangularSurface Format

482 9 0
dfsp-spirit
brainload

Load FreeSurfer brain imaging data with minimal cognitive load.

461 10 1
connectomicslab
connectomemapper

Connectome Mapper 3: A Flexible and Open-Source Pipeline Software for Multiscale Multimodal Human Connectome Mapping

451 83 31
feilong
brainplotlib

A lightweight package to plot brain surfaces with Python.

425 45 3