Brain Python Packages

pybv

A lightweight I/O utility for the BrainVision data format, written in Python.

brainglobe-atlasapi

A Python interface to access neuroanatomical atlases

bluecellulab

Biologically detailed neural network simulations and analysis API

obsidian-wiki

Framework for AI agents to build and maintain a digital brain through Obsidian wiki using Karpathy's LLM Wiki pattern

neurite

Neural networks toolbox focused on medical image analysis

siibra

Software interfaces for interacting with brain atlases - Python client

bg-atlasapi

A Python interface to access neuroanatomical atlases

mne-lsl

A framework for real-time brain signal streaming with MNE-Python.

neurodamus

A BBP Simulation Control application for NEURON

brainreg

Automated 3D brain registration with support for multiple species and atlases.

fafbseg

Tools to work with the FlyWire connectome. Fully interoperable with navis.

brainles-preprocessing

preprocessing tools for multi-modal 3D brain imaging

flybrains

Transforms for navis that enable mapping between different Drosophila template brains.

beautiful-brains

Beautiful Brains is a python-based visualization library for NIfTI images.

mindm

MindManager Automation and Integration on Windows and MacOS

brain2scalp

Map MNI, Talairach or native-space brain coordinates to their nearest scalp entry point

vbai

A PyTorch-based deep learning library for multi-task brain MRI analysis. Train models for simultaneous dementia classification and brain tumor detection with just a few lines of code.

nigsp

NiGSP: a module for graph signal processing on neuroimaging data

visbrain

A multi-purpose GPU-accelerated open-source suite for brain data visualization

deepparcellation

DeepParcellation: deep learning for robust brain MRI parcellation of elderly East Asians

mindm-mcp

MindManager MCP Server for Automation and Integration on Win + macOS

freesurfer-surface

Python Library to Read and Write Surface Files in Freesurfer's TriangularSurface Format

cvasl

This is a repo for the Cerebrovascular Brain Age project

neurodatasets

The neurodatasets package provides a curated collection of neuroscience and brain-related datasets for data analysis, statistical modeling, and machine learning research. It includes datasets related to biomedical voice recordings, MRI brain imaging, Alzheimer's and Parkinson's disease biomarkers, epilepsy seizures, ADHD symptoms