Brain Connectivity Python Packages

nilearn

Machine learning for NeuroImaging in Python

brainfc

Resting-state fMRI functional connectivity, connectome, brain network and hypergraph analysis in Python with a local GUI. 静息态 fMRI · 功能连接矩阵 · 脑网络 · 超图分析

pynets

A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning

spectral-connectivity

Frequency domain estimation and functional and directed connectivity analysis tools for electrophysiological data

actflow

The Brain Activity Flow ("Actflow") Toolbox. Tools to quantify the relationship between connectivity and task activity through network simulations and machine learning prediction. Helps determine how connections contribute to specific brain functions.

pypte

Pythonic implementation of the Phase Transfer Entropy method using NumPy and SciPy

seg2link

Napari-based 3D cell segmentation software using machine learning predictions as inputs, especially for EM image stacks of brains

braph

Brain Analysis using Graph Theory

hypercoil

A differentiable program for mapping brain function