Brain Connectivity Python Packages

nilearn

Machine learning for NeuroImaging in Python

spectral-connectivity

Frequency domain estimation and functional and directed connectivity analysis tools for electrophysiological data

pynets

A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning

actflow

The Brain Activity Flow ("Actflow") Toolbox. Tools to quantify the relationship between connectivity and task activity through network simulations and machine learning prediction. Helps determine how connections contribute to specific brain functions.

hypercoil

Differentiable programming for neuroimaging analysis

seg2link

Napari-based 3D cell segmentation software using machine learning predictions as inputs, especially for EM image stacks of brains

braph

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