Blast Python Packages

gget

🧬 gget enables efficient querying of genomic reference databases

datasus-dbc

Decompress DATASUS's dbc files into dbf files in python.

pypdb

A Python API for the RCSB Protein Data Bank (PDB)

jcvi

Python library to facilitate genome assembly, annotation, and comparative genomics

moose-classifier

Alignment based taxonomic classifier

akrup

Ancestral Karyotype Reconstruction Universal Pipeline

spestimator

A tool to predict bacterial species from fasta files using RefSeq 16S.

elastic-blast

ElasticBLAST runs BLAST searches faster by distributing its work to multiple cloud instances. This allows larger numbers of queries to be searched in less time compared to BLAST+ on a single host. Use of the cloud facilitates collaboration, sharing of results, datasets and pipelines on a common platform. The National Center for Biotechnology Information ([NCBI](https://www.ncbi.nlm.nih.gov)), part of the National Library of Medicine at the NIH, developed and maintains ElasticBLAST.

primerserver2

a high-throughput primer design and specificity-checking platform

pyncbitk

Cython bindings and Python interface to the NCBI C++ ToolKit (including BLAST+).

pyncbitk-runtime

Cython bindings and Python interface to the NCBI C++ ToolKit (including BLAST+).

blastmining

Mining NCBI BLAST output

genome-collector

Easily download and store taxID genomes from NCBI

datasnakes

An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵

hpcblast

No description available

orthoevol

An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵

decouphage

The art of decorating a phage genome by gluing feature cutouts into it.

emirpred

EmiRPred: A computational approach to predict exosomal and non-exosomal miRNA

mirnablast

Search genome loci using the miRNA sequence

transfacpred

A method to predict the transcription factors using protein sequences.