Blast Python Packages

gget

🧬 gget enables efficient querying of genomic reference databases

impactx-noacc

high-performance modeling of beam dynamics in particle accelerators with collective effects

datasus-dbc

Decompress DATASUS's dbc files into dbf files in python.

pypdb

A Python API for the RCSB Protein Data Bank (PDB)

jcvi

Python library to facilitate genome assembly, annotation, and comparative genomics

akrup

AKRUP: ancestral karyotype reconstruction universal pipeline

pyncbitk-runtime

Cython bindings and Python interface to the NCBI C++ ToolKit (including BLAST+).

orthoevol

An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵

genome-collector

:stars: Easily download genomes and build BLAST/Bowtie indexes in Python

elastic-blast

ElasticBLAST is a cloud-based tool to perform your BLAST searches faster and make you more effective

primerserver2

PrimerServer2: a high-throughput primer design and specificity-checking platform

pyncbitk

Cython bindings and Python interface to the NCBI C++ ToolKit (including BLAST+).

spestimator

Uses 16S to identify a range of possible species.

moose-classifier

dna/rna alignment classifier

hpcblast

divide blast query and run all chunks across HPC or localhost in parallelly

blastmining

Mining NCBI BLAST output

datasnakes

An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵

antioxipred

AntiOxiPred: A model to predict antioxidant potential in peptides.

decouphage

The art of decorating a phage genome by gluing feature cutouts into it.

mirnablast

Search genome loci using the miRNA sequence

emirpred

EmiRPred: A computational approach to predict exosomal and non-exosomal miRNA

transfacpred

An ensemble method for predicting transcription factor in protein sequences