Blast Python Packages

gget

🧬 gget enables efficient querying of genomic reference databases

datasus-dbc

Decompress DATASUS's dbc files into dbf files in python.

pypdb

A Python API for the RCSB Protein Data Bank (PDB)

jcvi

Python library to facilitate genome assembly, annotation, and comparative genomics

moose-classifier

dna/rna alignment classifier

elastic-blast

ElasticBLAST runs BLAST searches faster by distributing its work to multiple cloud instances. This allows larger numbers of queries to be searched in less time compared to BLAST+ on a single host. Use of the cloud facilitates collaboration, sharing of results, datasets and pipelines on a common platform. The National Center for Biotechnology Information ([NCBI](https://www.ncbi.nlm.nih.gov)), part of the National Library of Medicine at the NIH, developed and maintains ElasticBLAST.

akrup

Ancestral Karyotype Reconstruction Universal Pipeline

primerserver2

a high-throughput primer design and specificity-checking platform

pyncbitk

Cython bindings and Python interface to the NCBI C++ ToolKit (including BLAST+).

pyncbitk-runtime

Cython bindings and Python interface to the NCBI C++ ToolKit (including BLAST+).

orthoevol

This package aids in the analysis of orthologous genes.

spestimator

Uses 16S to identify a range of possible species.

genome-collector

Easily download and store taxID genomes from NCBI

blastmining

No description available

hpcblast

No description available

decouphage

The art of decorating a phage genome by gluing feature cutouts into it.

datasnakes

This package helps in the analysis of orthologous genes.

emirpred

EmiRPred: A computational approach to predict exosomal and non-exosomal miRNA

transfacpred

An ensemble method for predicting transcription factor in protein sequences

mirnablast

Use mature query miRNA sequences to BLAST the genome, fold the flanking sequences of the subjects to find possible homologous miRNA locus