Biotechnology Python Packages

mrnavax

Practical Python tools for the AI-leverage layers in mRNA cancer therapy. Stdlib-only: codon optimization, neoantigen screening, TrialGPT-style trial matching, and LNP composition advice.

codontransformer

CodonTransformer (2M+ Downloads); The tool for codon optimization, optimizing DNA for protein expression

xad

High-Performance Automatic Differentiation for Python

biocomputing

pip install biocomputing

isogroup

Data processing tool for automatic extraction and annotation of isotopic information collected by mass spectrometry

dasi

A Python molecular biology CAD tool with a dead-simple user interface

dspp-keras

Protein order and disorder data for Keras, Tensor Flow and Edward frameworks with automated update cycle made for continuous learning applications.

permea-core

Open toolkit and benchmarks for sequence-first delivery and mRNA expression engineering.

reactomepy

Explore biomolecular pathways in Reactome from the command-line or a Python script

sequence-alignment-by-cross-correlation

The project is based on the paper Sequence Alignment by Cross-Correlation and bridges the gap between the knowledge and an useful implementation.