Biotech Python Packages

pytdc

Therapeutics Commons (TDC): Multimodal Foundation for Therapeutic Science

pylabrobot

interactive & hardware agnostic SDK for lab automation

pioreactor

Hardware and software for accessible, extensible, and scalable bioreactors. Built on Raspberry Pi.

biocomputing

pip install biocomputing

biolab-mcp

Hash-chained MCP server for auditable biological database queries — PubMed, Europe PMC, ClinicalTrials.gov, bioRxiv/medRxiv. Live, free to use, zero install.

elnora

Elnora CLI — command-line interface for the Elnora bioprotocol platform

demuxalot

Reliable, scalable, efficient demultiplexing for single-cell RNA sequencing

moisscode

A domain-specific language for clinical decision support and biotech workflow automation

geno-lewm

An action-conditioned JEPA world model for DNA, built on top of Carbon.

permea-core

Open toolkit and benchmarks for sequence-first delivery and mRNA expression engineering.

sporedb

Bioprocess-native time-series database

reactomepy

Explore biomolecular pathways in Reactome from the command-line or a Python script