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Bioregistry Python Packages

Python packages with the GitHub topic bioregistry. Sorted by relevance, with stars and monthly downloads.
linkml
prefixmaps

Semantic prefix map registry

217K 14 5
biopragmatics
bioregistry

📮 An integrative registry of biological databases, ontologies, and nomenclatures.

188K 143 68
pybel
pybel

🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)

16K 138 33
biopragmatics
pyobo

📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures

10K 76 18
biopragmatics
biomappings

🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primary sources.

3K 62 16
callahantiff
pkt-kg

A Python library for scalable knowledge semantic graph construction

322 201 35
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