Bioregistry Python Packages

prefixmaps

Semantic prefix map registry

bioregistry

📮 An integrative registry of biological databases, ontologies, and nomenclatures.

pybel

🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)

pyobo

📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures

biomappings

🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primary sources.

pkt-kg

PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models