Biopragmatics Python Packages

bioregistry

📮 An integrative registry of biological databases, ontologies, and nomenclatures.

bioversions

🪝 What's the latest version for each database?

pyobo

📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures

biomappings

🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primary sources.

semra

🛣️ Semantic Mapping Reasoning Assembler (SeMRA): tooling for semantic mappings

biolexica

📘 Generate and apply coherent biomedical lexical indices for NER and NEN

biolookup

🔍 The Biolookup Service retrieves metadata and ontological information about biomedical entities.