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Biomedical Nlp Python Packages

Python packages with the GitHub topic biomedical-nlp. Sorted by monthly downloads, with stars and forks.
rajdeepmondaldotcom
pmcgrab

A PMC ID in. Clean, loss-aware article JSON out. Parse PubMed Central and JATS XML for biomedical AI, RAG, search, and literature pipelines.

667 24 1
PFreda-Lab
okf-loremaster

Multi-agentic biomedical literature evidence extraction, curation, and summarization from PubMed/PMC in Open Knowledge Format (OKF) for downstream machine learning, feature selection, and agentic applications.

414 2 0
panwarnalini-hub
docling-extractor

Clinical trial document intelligence pipelines using medallion architecture. Classification (87 categories) + NER (8 entity types) on Databricks.

74 1 1
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