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Biomedical Imaging Python Packages

Python packages with the GitHub topic biomedical-imaging. Sorted by monthly downloads, with stars and forks.
AAitorG
napari-dinosim

This repository provides DINOSim, a method that leverages the DINOv2 foundation model for zero-shot object detection and segmentation in bioimage analysis. DINOSim uses pretrained DINOv2 embeddings to compare patch similarities, allowing it to detect and segment unseen objects in complex datasets with minimal annotations.

262 14 3
EtienneChollet
oct-tissuemasking

Deep Learning-Based CLI for Tissue Masking 3D OCT Images

193 0 0
tuttelikz
farabio

:robot: PyTorch toolkit for biomedical imaging :heart:

126 50 3
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    • Sources & methodology