Biomarkers Python Packages

biopsykit

A Python package for the analysis of biopsychological data.

dcccpy-linux-runtime

Calculate Centiloid / CenTauR and other imaging biomarkers in seconds: An open-source 3D Slicer extension and agent-friendly tool for ultra-fast, PET-only brain PET normalization and biomarker quantification across amyloid (Centiloid), tau (CenTauR), FDG, DAT, and other PET modalities.

pyaging

A Python-based compendium of GPU-optimized aging clocks.

dcccpy

Calculate Centiloid / CenTauR and other imaging biomarkers in seconds: An open-source 3D Slicer extension and agent-friendly tool for ultra-fast, PET-only brain PET normalization and biomarker quantification across amyloid (Centiloid), tau (CenTauR), FDG, DAT, and other PET modalities.

ncpi

Neural circuit parameter inference using electrophysiological data

genomap

Cartography of Genomic Interactions Enables Deep Analysis of Single-Cell Expression Data (Nature Communications, 2023)

frd-score

Official implementation of the Fréchet Radiomic Distance

hiwenet

Histogram-weighted pairwise distances for node-wise feature data.

quicknat-pytorch

PyTorch Implementation of QuickNAT and Bayesian QuickNAT, a fast brain MRI segmentation framework with segmentation Quality control using structure-wise uncertainty

thymia-sentinel

Beta Product - Integration examples for Thymia Sentinel, a real-time voice biomarker and safety monitoring service for voice AI agents.

confound-prediction

Confound-isolating cross-validation approach to control for a confounding effect in a predictive model.

miidl

A Python package for microbial biomarkers identification powered by interpretable deep learning

fasting

A Python package to interact with fasting logs from apps like Zero.