Biomarkers Python Packages

pyaging

A Python-based compendium of GPU-optimized aging clocks.

biopsykit

A Python package for the analysis of biopsychological data.

dcccpy

Calculate Centiloid / CenTauR and other imaging biomarkers in seconds: An open-source 3D Slicer extension and agent-friendly tool for ultra-fast, PET-only brain PET normalization and biomarker quantification across amyloid (Centiloid), tau (CenTauR), FDG, DAT, and other PET modalities.

genomap

Cartography of Genomic Interactions Enables Deep Analysis of Single-Cell Expression Data (Nature Communications, 2023)

shedding-hub

Data and statistical models for biomarker shedding.

dcccpy-linux-runtime

Calculate Centiloid / CenTauR and other imaging biomarkers in seconds: An open-source 3D Slicer extension and agent-friendly tool for ultra-fast, PET-only brain PET normalization and biomarker quantification across amyloid (Centiloid), tau (CenTauR), FDG, DAT, and other PET modalities.

dcccpy-linux-arm64-runtime

Calculate Centiloid / CenTauR and other imaging biomarkers in seconds: An open-source 3D Slicer extension and agent-friendly tool for ultra-fast, PET-only brain PET normalization and biomarker quantification across amyloid (Centiloid), tau (CenTauR), FDG, DAT, and other PET modalities.

hiwenet

Histogram-weighted Networks for Connectivity & Advanced Analysis in Neuroscience

dcccpy-windows-runtime

Calculate Centiloid / CenTauR and other imaging biomarkers in seconds: An open-source 3D Slicer extension and agent-friendly tool for ultra-fast, PET-only brain PET normalization and biomarker quantification across amyloid (Centiloid), tau (CenTauR), FDG, DAT, and other PET modalities.

frd-score

Official implementation of the Fréchet Radiomic Distance

dcccpy-macos-runtime

Calculate Centiloid / CenTauR and other imaging biomarkers in seconds: An open-source 3D Slicer extension and agent-friendly tool for ultra-fast, PET-only brain PET normalization and biomarker quantification across amyloid (Centiloid), tau (CenTauR), FDG, DAT, and other PET modalities.

thymia-sentinel

Beta Product - Integration examples for Thymia Sentinel, a real-time voice biomarker and safety monitoring service for voice AI agents.

miidl

A Python package for biomarkers identification powered by interpretable deep learning

quicknat-pytorch

PyTorch Implementation of QuickNAT and Bayesian QuickNAT, a fast brain MRI segmentation framework with segmentation Quality control using structure-wise uncertainty

confound-prediction

Confound-isolating cross-validation approach to control for a confounding effect in a predictive model.

fasting

A Python package to interact with fasting logs from apps like Zero.

ncpi

Neural circuit parameter inference using electrophysiological data