PyRank

Biomarker Discovery Python Packages

Python packages with the GitHub topic biomarker-discovery. Sorted by monthly downloads, with stars and forks.
BradSegal
pyplasmode

Plasmode simulations for prediction and feature-selection benchmarking.

712 0 0
nadeemlab
spatialprofilingtoolbox

Spatial Multiomics Profiler for Spatial Characterization of Tissue Microenvironment (https://smprofiler.io) [NeurIPS'26]

589 23 2
xinglab-ai
genomap

Cartography of Genomic Interactions Enables Deep Analysis of Single-Cell Expression Data (Nature Communications, 2023)

425 20 5
lpfann
fri

Python implementation of the feature relevance interval (FRI) algorithm

380 8 4
euxhenh
phenotype-cover

A package for biomarker selection based on multiset multicover and the cross-entropy-method.

122 3 0
infocusp
pyscalr

Single cell analysis using Low Resource

106 20 0
nadeemlab
smprofiler

Spatial Multiomics Profiler for Spatial Characterization of Tissue Microenvironment (https://smprofiler.io) [NeurIPS'26]

70 23 2
ellenbet
survana

Survana: software for survival analysis and biomarker discovery using ensemble methods.

48 1 0