PyRank

Biological Simulations Python Packages

Python packages with the GitHub topic biological-simulations. Sorted by monthly downloads, with stars and forks.
brian-team
brian2

Brian is a free, open source simulator for spiking neural networks.

40K 1K 303
openbraininstitute
bluepyopt

Blue Brain Python Optimisation Library

8K 10 0
brian-team
brian2cuda

A brian2 extension to simulate spiking neural networks on GPUs

2K 84 23
BjornFJohansson
ypkpathway

Automatic pathway assembly with the YeastPathwayKit

1K 2 1
PMEAL
pytrax

Random walk to calculate the tortuosity tensor of images

296 34 18
Edinburgh-Genome-Foundry
topkappy

:waxing_gibbous_moon: Pythonic bindings for the Kappa model simulation language

82 5 0
Edinburgh-Genome-Foundry
kappagate

:crystal_ball: Predict DNA assembly clone validity rates - powered by Kappa

80 10 0
briandconnelly
hankshaw

Model, Data, and Analysis Scripts for "The Evolution of Cooperation by the Hankshaw Effect"

58 1 3
Bluejee
mnest

MNEST (Multi-agent Neuro Evolution Simulation Toolkit) is a software framework designed to model and study emergent behavior in complex systems.

52 7 7