PyRank

Biological Simulations Python Packages

Python packages with the GitHub topic biological-simulations. Sorted by relevance, with stars and monthly downloads.
brian-team
brian2

Brian is a free, open source simulator for spiking neural networks.

43K 1K 285
openbraininstitute
bluepyopt

Blue Brain Python Optimisation Library

16K 9 0
brian-team
brian2cuda

A Brian2 extension to simulate spiking neural networks on GPUs

1K 74 21
BjornFJohansson
ypkpathway

Automatic pathway assembly with the YeastPathwayKit

862 2 1
PMEAL
pytrax

Random walk to calculate the tortuosity tensor of images

360 34 18
Edinburgh-Genome-Foundry
topkappy

:waxing_gibbous_moon: Pythonic bindings for the Kappa model simulation language

187 5 0
Edinburgh-Genome-Foundry
kappagate

:crystal_ball: Predict DNA assembly clone validity rates - powered by Kappa

96 10 0
briandconnelly
hankshaw

Model for The Evolution of Cooperation by the Hankshaw Effect

83 1 2
Bluejee
mnest

MNEST (Multi-agent Neuro Evolution Simulation Toolkit) is a software framework designed to model and study emergent behavior in complex systems.

76 7 7