Biological Expression Language Python Packages

pybel

🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)

15K 138 33

bel-resources

Utilities for BEL resource files.

14K 1 0

bio2bel

A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)

3K 21 5

bio2bel-wikipathways

A package for converting Wikipathways to BEL

1K 3 1

bio2bel-hgnc

A package for converting HGNC to BEL

1K 2 0

bio2bel-kegg

A package for converting KEGG gene sets into BEL

1K 13 3

bio2bel-reactome

A wrapper around Reactome RESTful API

948 5 1

bio2bel-chebi

A package for converting ChEBI to BEL

804 1 0

bel-repository

A utility for loading data from repositories of BEL documents

772 1 0

bio2bel-entrez

A package for parsing and storing Entrez Gene

763 0 0

pybel-tools

A PyBEL extension for analyzing BEL graphs

661 5 5

bio2bel-mirtarbase

Serializes text-mined miRNA-target interactions to BEL

467 0 0

bio2bel-mirbase

A Bio2BEL package for miRBase (http://www.mirbase.org)

390 0 1

hbp-knowledge

Curation of Neurodegeneration in Biological Expression Language (CONIB)

366 4 7

bel-enrichment

A package for generating curation sheets for rationally enriching a BEL graph using INDRA and PyBEL.

351 7 0

bio2bel-drugbank

A Bio2BEL package for DrugBank (https://www.drugbank.ca)

336 10 5

bel2scm

A package for creating causal graphs in pyro

333 10 4

pathme

Harmonizing pathway databases using Biological Expression Language (BEL)

278 20 2

bio2bel-interpro

A Bio2BEL package for converting InterPro to BEL

267 0 0

bio2bel-uniprot

UniProt Knowledge Base to BEL

218 0 1

bel-commons

A web application exposing core PyBEL functionalities

203 4 0

bio2bel-expasy

A Bio2BEL package for converting ExPASy to BEL

202 0 0

pybel-cx

A PyBEL extension for interconversion with CX

194 0 0

pybel-jupyter

A PyBEL extension for Jupyter notebooks

174 2 0