PyRank

Biological Expression Language Python Packages

Python packages with the GitHub topic biological-expression-language. Sorted by relevance, with stars and monthly downloads.
pybel
pybel

🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)

22K 139 34
cthoyt
bel-resources

Utilities for BEL resource files.

17K 1 0
bio2bel
bio2bel

A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)

9K 22 5
pybel
pybel-tools

A PyBEL extension for analyzing BEL graphs

1K 5 5
bio2bel
bio2bel-wikipathways

Integration of pathway-related information from WikiPathways in BEL

1K 3 1
bio2bel
bio2bel-hgnc

Hugo Gene Nomenclature Consortium (HGNC) to BEL

1K 2 0
bio2bel
bio2bel-kegg

A Bio2BEL package for integrating pathway-related information from KEGG in BEL

1K 13 3
bio2bel
bio2bel-reactome

Integration of pathway-related information from Reactome in BEL

830 5 1
cthoyt
bio2bel-entrez

A Bio2BEL package for converting Entrez and HomoloGene to BEL

792 0 0
bio2bel
bio2bel-chebi

A Bio2BEL package for converting Chemical Entities of Biological Interest (ChEBI) to BEL

716 1 0
pybel
bel-repository

A utility for loading data from repositories of BEL documents

605 1 0
bio2bel
bio2bel-mirtarbase

Serializes text-mined miRNA-target interactions to BEL

346 0 0
bio2bel
bio2bel-drugbank

A Bio2BEL package for DrugBank (https://www.drugbank.ca)

308 10 5
PathwayMerger
pathme

Harmonizing pathway databases using Biological Expression Language (BEL)

302 20 2
bel-enrichment
bel-enrichment

A package for generating curation sheets for rationally enriching a BEL graph using INDRA and PyBEL

301 7 0
pybel
pybel-jupyter

A PyBEL extension for Jupyter notebooks

286 2 0
pharmacome
hbp-knowledge

Knowledge curated in BEL from full text during the Human Brain Pharmacome project

276 4 7
bio2bel
bio2bel-mirbase

Convert miRBase to BEL

275 0 1
COVID-19-Causal-Reasoning
bel2scm

Generate dynamic structural causal models from biological knowledge graphs encoded in the Biological Expression Language (BEL)

269 10 4
bio2bel
bio2bel-uniprot

A package for downloading, parsing, storing, and serializing UniProt

267 0 1
pybel
pybel-cx

A PyBEL extension for interconversion with CX

258 0 0
bio2bel
bio2bel-interpro

A Bio2BEL package for converting InterPro to BEL

256 0 0
bio2bel
bio2bel-expasy

A package for parsing and storing the ExPASy Enzyme Database

216 0 0
bel-commons
bel-commons

An environment for curating, validating, and exploring knowledge assemblies encoded in BEL

200 5 0