Biological Data Analysis Python Packages

protpy

Calculating a range of protein descriptors using their physicochemical, biological and structural properties 🔬.

metrics-petri

Python package for analysing Magnaporthe oryzae growth on petri dishes

py3plex

Py3plex - A multilayer complex network visualization and analysis library in python3

squarna

RNA secondary structure prediction tool

aop2db

Convert the AOP Wiki database to a relational database.

phigaro

Phigaro is a scalable command-line tool for predicting phages and prophages.

lam

LAM is a quantitative phenotyping tool intended for regionally defined analysis of Drosophila midguts based on objects detected from microscopy images.

devolearn

Accelerate data driven research in developmental biology with deep learning models

fuse-toolkit

FUSE toolkit supports fluorescent cell image alignment and analysis.

deepcell-spots

Deep Learning Library for Spot Detection

mnnpy

An implementation of MNN (Mutual Nearest Neighbors) correct in python.

bioviper

Enhancements to Biopython for working with biological data

memocell

Bayesian inference of stochastic cellular processes with and without memory in Python.

pylattice

A python library for lattice light-sheet image analysis

artem-rna

RNA/DNA 3D structure alignment tool

med-signal

A biological signal simulation and evaluation package

plugy

Processing plug microfluidics data

pycellid

Functions to analyze Cell-ID single-cell cytometry data using python language.

pepnet

Neural networks for amino acid sequences