Bioinformatics Software Python Packages

crest-sc

Chunked Rust Engine for Single-cell Transcriptomics

alphavx

CLI tool that batch-scores VCF variants against AlphaGenome and generates interpretable multi-modal effect reports.

pybio

pybio is a comprehensive Python framework designed to streamline genomics operations. It offers a direct interface to Ensembl genome assemblies and annotations, while also accommodating custom genomes via FASTA/GTF inputs.

vuegen

VueGen automates the creation of reports from bioinformatics outputs, supporting formats like PDF, HTML, DOCX, ODT, PPTX, Reveal.js, Jupyter notebooks, and Streamlit web applications. Users simply provide a directory with output files and VueGen compiles them into a structured report.

vuecore

Python package for creating interactive and static visualizations of multi-omics data

splicekit

splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq

abaco

Batch Effect Correction framework for metagenomic data