Bioinformatics Analysis Python Packages

rnalysis

RNAlysis is an analysis software for RNA sequencing data. RNAlysis can help to filter, visualize, explore, analyze, and share your data.

flowpaths

A Python package to quickly decompose weighted graphs into weights paths, under various models.

phigaro

Phigaro is a scalable command-line tool for predicting phages and prophages

buisciii-tools

set of helper tools for bu-isciii management of its core services portfolio.

codonu

An integrated package for codon usage analysis

bidali

Biological Data Analysis Library

dohlee

:package: My personal python utility library.

ciara-python

"Cluster Independent Algorithm for the identification of RAre cell types."

gmql

Python Library for data analysis based on GMQL

chronqc

A Quality Control Monitoring System for Clinical Next Generation Sequencing

tcga-gdc-downloader

Download and annotate TCGA RNA-seq counts from the GDC portal

pyrpipe

pyrpipe

neticspy

Python implementation of NetICS (Network-based Integration of Multi-omics data).

kvasirhgt

Searching for Horizontal Gene Transfer

pbxplore

A suite of tools to explore protein structures with Protein Blocks :snake:

pistis

Quality control plotting for long reads

pyrice

PyRice: a Python package for functional analysis of rice genes

unifunc

Tool for similarity analysis of protein function annotations.

discere

Protein Feature Extraction package for Machine Learning

pmoss

Python package to model the p-value as an n-dependent function using Monte Carlo cross-validation.

pyreqtl

A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expression using RNA-sequencing data.

umiread

Lightweight library for parsing quality control information for the UMIs in 10x single cell gene expression assays