Bioimaging Python Packages

bioimageio-core

Python libraries for loading, running and packaging bioimage.io models

iohub

Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata

biomero

BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster

tiledb-bioimg

Package supports all bio-imaging functionality provided by TileDB

iscc-bio

ISCC Processing for Multi-Dimensional Bioimage Data

pyimc

Rust library for reading imaging mass cytometry (IMC) data stored in .mcd files.

napari-tiledb-bioimg

Support reading and writing TileDB-Bioimaging image arrays within Napari