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Bioimaging Python Packages

Python packages with the GitHub topic bioimaging. Sorted by relevance, with stars and monthly downloads.
bioimage-io
bioimageio-core

Python libraries for loading, running and packaging bioimage.io models

21K 35 22
czbiohub-sf
iohub

Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata

11K 52 13
NL-BioImaging
biomero

BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster

5K 28 6
TileDB-Inc
tiledb-bioimg

Package supports all bio-imaging functionality provided by TileDB

765 19 3
bio-codes
iscc-bio

ISCC Processing for Multi-Dimensional Bioimage Data

425 0 0
AlanRace
pyimc

Rust library for reading imaging mass cytometry (IMC) data stored in .mcd files.

283 2 0
TileDB-Inc
napari-tiledb-bioimg

Support reading and writing TileDB-Bioimaging image arrays within Napari

87 9 0
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