Bioimaging Python Packages

bioimageio-core

Python libraries for loading, running and packaging bioimage.io models

iohub

Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata

biomero

BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster

macsima-qc

Quality control pipeline for MACSima / MACSiQView cell segmentation

tiledb-bioimg

Package supports all bio-imaging functionality provided by TileDB

pyimc

Rust library for reading imaging mass cytometry (IMC) data stored in .mcd files.

iscc-bio

BioCodes - ISCC Processing for BioImaging Data

napari-tiledb-bioimg

Support reading and writing TileDB-Bioimaging image arrays within Napari