Biodiversity Python Packages

pyinaturalist

Python client for iNaturalist

pygbif

GBIF Python client

pytorchwildlife

Microsoft AI for Good Lab — Biodiversity research hub. Open-source AI models, edge devices, and tools for biodiversity monitoring and conservation. Your source for MegaDetector, SPARROW, PytorchWildlife, Bioacoustics, and more.

pyinaturalist-convert

Data conversion tools for iNaturalist observations and taxonomy

python-dwca-reader

🐍 A Python package to read Darwin Core Archive (DwC-A) files.

specimux

High-performance dual barcode and primer demultiplexer for MinION sequenced reads, optimized for fungal DNA barcoding.

afscgap

Python-based tools for NOAA AFSC GAP marine species surveys data

stemflow

A Python Package for Adaptive Spatio-Temporal Exploratory Model (AdaSTEM)

aoh

Area of Habitat calculation code for biodiversity assessment pipelines

ipybd

Powerful Data Cleaner For Biodiversity

envoi-geospatial

Automated feature extraction from environmental data sources for ecological and spatial analysis.

naturtag

Tag your nature photos with iNat taxonomy and observation metadata

regi0

A Python package to complement and verify biological records

dwca-writer

Python package for writing Darwin Core Archives (DwC-A)

wiutils

Exploration utilities for Wildlife Insights projects.

bdcctools

A Python package to complement and verify biological records

pyinaturalist-open-data

Python utilities for working with inaturalist-open-data

python-eml

Python package containing dataclasses for the Ecological Metadata Language (EML) standard

gbif-dl

GBIF classification dataloaders

spsearch

python tools to get species data from various API, like IUCN Red List or Encyclopedia of Life.