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Biodiversity Python Packages

Python packages with the GitHub topic biodiversity. Sorted by relevance, with stars and monthly downloads.
pyinat
pyinaturalist

Python client for iNaturalist

18K 174 20
gbif
pygbif

GBIF Python client

15K 145 39
microsoft
pytorchwildlife

Microsoft AI for Good Lab — Biodiversity research hub. Open-source AI models, edge devices, and tools for biodiversity monitoring and conservation. Hosts SPARROW-Studio at /SPARROW-Studio. Your source for MegaDetector, SPARROW, PytorchWildlife, Bioacoustics, and more.

8K 1K 292
BelgianBiodiversityPlatform
python-dwca-reader

🐍 A Python package to read Darwin Core Archive (DwC-A) files.

2K 49 21
SchmidtDSE
afscgap

Python-based tools for NOAA AFSC GAP marine species surveys data

1K 5 4
chenyangkang
stemflow

A Python Package for Adaptive Spatio-Temporal Exploratory Model (AdaSTEM)

1K 26 1
quantifyearth
aoh

Area of Habitat calculation code for biodiversity assessment pipelines

953 4 3
pyinat
pyinaturalist-convert

Data conversion tools for iNaturalist observations and taxonomy

819 21 2
leisux
ipybd

Powerful Data Cleaner For Biodiversity

473 20 10
pyinat
naturtag

Tag your nature photos with iNat taxonomy and observation metadata

450 53 3
pieterprovoost
dwca-writer

Python package for writing Darwin Core Archives (DwC-A)

242 6 3
PEM-Humboldt
wiutils

Exploration utilities for Wildlife Insights projects.

240 0 0
PEM-Humboldt
bdcctools

Biodiversity Data Cleaning and Curation Tools

239 2 2
PEM-Humboldt
regi0

A Python toolkit to complement and verify biological records.

225 2 2
JWCook
pyinaturalist-open-data

Python utilities for working with inaturalist-open-data

182 4 0
joshuaowalker
specimux

Dual barcode and primer demultiplexing system for MinION sequenced reads

167 6 0
plantnet
gbif-dl

GBIF classification dataloaders

164 48 7
pieterprovoost
python-eml

Python package containing dataclasses for the Ecological Metadata Language (EML) standard

102 1 0
AzukiOtter
spsearch

python tools to get species data from various API, like IUCN Red List or Encyclopedia of Life.

38 3 0
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