Biodiversity Python Packages

pygbif

GBIF Python client

pyinaturalist

Python client for iNaturalist

pytorchwildlife

Microsoft AI for Good Lab — Biodiversity research hub. Open-source AI models, edge devices, and tools for biodiversity monitoring and conservation. Your source for MegaDetector, SPARROW, PytorchWildlife, Bioacoustics, and more.

python-dwca-reader

🐍 A Python package to read Darwin Core Archive (DwC-A) files.

pyinaturalist-convert

Data conversion tools for iNaturalist observations and taxonomy

stemflow

A Python Package for Adaptive Spatio-Temporal Exploratory Model (AdaSTEM)

afscgap

Python-based tools for NOAA AFSC GAP marine species surveys data

aoh

Area of Habitat calculation code for biodiversity assessment pipelines

envoi-geospatial

Automated feature extraction from environmental data sources for ecological and spatial analysis.

ipybd

Powerful data cleaner for biodiversity

naturtag

Tag your nature photos with iNat taxonomy and observation metadata

dwca-writer

Python package for writing Darwin Core Archives (DwC-A)

pyinaturalist-open-data

Python utilities for working with inaturalist-open-data

bdcctools

A Python package to complement and verify biological records

wiutils

Exploration utilities for Wildlife Insights projects.

specimux

High-performance dual barcode and primer demultiplexer for MinION sequenced reads, optimized for fungal DNA barcoding.

regi0

A Python package to complement and verify biological records

gbif-dl

GBIF classification dataloaders

python-eml

Python package containing dataclasses for the Ecological Metadata Language (EML) standard

spsearch

Python tools to get species data from various API.