Bioconda Python Packages

pyrodigal

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!

genomepy

genes and genomes at your fingertips

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

dotmatch

Fast exact short-DNA known-target assignment for CRISPR guides, barcodes, primers, panels, and whitelists.

dajin2

🔬 Genotyping tool for genome-edited samples using nanopore-targeted sequencing

spoligotyper

In silico spoligotyping of Mycobacterium tuberculosis complex genomes (M. bovis, M. tuberculosis, ...) from reads or assemblies

sniffles

Structural variation caller using third generation sequencing

primer-finder

Find group-specific kmers in assembled genomes to design selective (q)PCR assays

protgraph

ProtGraph - A Graph-Generator for Proteins

run-dbcan

Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.

pyrpipe

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

deepaccess

Methods for training and interpretation of an ensemble of neural networks for multi-task functional prediction of accessibility or histone modifications from DNA sequence.

multiqc-celescope

Aggregate results from bioinformatics analyses across many samples into a single report.

multiqc-msk

Aggregate results from bioinformatics analyses across many samples into a single report.

multiqc-vlad

Aggregate results from bioinformatics analyses across many samples into a single report.

multiqc-jupyterlab-helper

Aggregate results from bioinformatics analyses across many samples into a single report.