PyRank

Biochemical Networks Python Packages

Python packages with the GitHub topic biochemical-networks. Sorted by relevance, with stars and monthly downloads.
biosimulators
biosimulators-test-suite

Tools for validating that biosimulation tools are consistent with the BioSimulators standards

4K 7 2
charlesrocabert
metevolsim

MetEvolSim (Metabolome Evolution Simulator) Python Package

2K 5 0
biosimulators
biosimulators-copasi

BioSimulators-compliant command-line interface to the COPASI simulation program <http://copasi.org>.

2K 2 3
biomass-dev
biomass

A Python Framework for Modeling and Analysis of Signaling Systems

2K 29 13
biosimulators
biosimulators-tellurium

BioSimulators-compliant command-line interface to the Tellurium/roadrunner simulator <https://tellurium.readthedocs.io/>.

2K 2 2
biosimulators
biosimulators-gillespy2

BioSimulators-compliant command-line interface to the GillesPy2 simulation program.

1K 2 1
biosimulators
biosimulators-cobrapy

BioSimulators-compliant command-line interface to the COBRApy simulation program <https://opencobra.github.io/cobrapy/>.

1K 2 0
biosimulators
biosimulators-bionetgen

BioSimulators-compliant command-line interface to the BioNetGen simulation program <https://bionetgen.org>.

953 1 2
pasmopy
pasmopy

Patient-Specific Modeling in Python

397 19 7
BrainAnnex
life123

Dynamical modeling of biological systems in 1, 2 and 3D - incl. diffusion, reactions & compartments. A platform for quantitative reactomics (Python, JupyterLab, Plotly)

370 6 1