Biobakery Python Packages

metaphlan

MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data

phylophlan

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes

metawibele

MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome

fugassem

FUGAsseM: Function predictor of Uncharacterized Gene products by Assessing high-dimensional community data in Microbiomes

graphlan

GraPhlAn is a software tool for producing high-quality circular representations of taxonomic and phylogenetic trees. GraPhlAn focuses on concise, integrative, informative, and publication-ready representations of phylogenetically- and taxonomically-driven investigation.