Behavior Python Packages

behave-restful

BDD Framework to Test REST Services and APIs

movement

A Python toolbox for analysing animal body movements across space and time

annolid

An annotation and instance segmentation-based multi-object tracking and behavior analysis package.

hpl-specs

High-Level Property Specification Language

facemap

Facemap: Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.

bpod-core

A modern Python interface for Bpod Finite State Machines.

rigel-hpl

High-Level Property Specification Language

birdwatcher

A Python computer vision library for animal behavior

jasper

An asynchronous behavior-driven development framework.

flame-components

Models flame characteristics (mid-flame wind speed, length, height, tilt, residence time, and depth) for surface and crown fires.

forester-client-http

unleash the power of behavior trees!

explore-behavior

Official implementation of EXPLORE: A novel deep learning-based analysis method for exploration learning in object recognition tests

behavioralflow

Reinforcement learning library inspired by Behavioral Psychology, focused on simplicity. It uses Python dictionaries instead of complex tables, making implementation intuitive. Agents learn through reinforcement and punishment, considering context and consequences. They can also combine actions to create new behaviors.

element-event

DataJoint Element for event-based behavior experiments

poseinterface

A framework for benchmarking pose estimation and point tracking methods on animal behaviour videos.

video-behavior-tracking

Python package to track position, velocity, head direction from video for Loren Frank datasets

df3dpostprocessing

Functions for postprocessing DeepFly3D results, such as, align 3d model and calculate leg angles

bpod-modules-ibl

Python library for accessing Bpod modules used at IBL