Behavior Python Packages

behave-restful

BDD Framework to Test REST Services and APIs

movement

A Python toolbox for analysing animal body movements across space and time

rigel-hpl

High-Level Property Specification Language

annolid

An annotation and instance segmentation-based multiple animal tracking and behavior analysis package.

bpod-core

A modern Python interface for Bpod Finite State Machines.

hpl-specs

High-Level Property Specification Language

explore-behavior

Official implementation of EXPLORE: A novel deep learning-based analysis method for exploration learning in object recognition tests

facemap

Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.

birdwatcher

A Python computer vision library for animal behavior

element-event

DataJoint Elements for Trialized Experiments

video-behavior-tracking

Extract behavior from video

behavioralflow

Reinforcement learning library inspired by Behavioral Psychology, focused on simplicity. It uses Python dictionaries instead of complex tables, making implementation intuitive. Agents learn through reinforcement and punishment, considering context and consequences. They can also combine actions to create new behaviors.

jasper

An asynchronous behavior-driven development framework.

df3dpostprocessing

Functions for postprocessing DeepFly3D results, such as, align 3d model and calculate leg angles

bpod-modules-ibl

Python library for accessing Bpod modules used at IBL

sl-behavior

A python library that provides tools for processioning behavior data acquired in the Sun (NeuroAI) lab.