Behavior Python Packages

rigel-hpl

High-Level Property Specification Language

behave-restful

BDD Framework to Test REST Services and APIs

movement

A Python toolbox for analysing animal body movements across space and time

annolid

An annotation and instance segmentation-based multi-object tracking and behavior analysis package.

facemap

Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.

hpl-specs

High-Level Property Specification Language

bpod-core

A modern Python interface for Bpod Finite State Machines.

birdwatcher

A Python computer vision library for animal behavior

explore-behavior

Official implementation of EXPLORE: A novel deep learning-based analysis method for exploration learning in object recognition tests

behavioralflow

Reinforcement learning library inspired by Behavioral Psychology, focused on simplicity. It uses Python dictionaries instead of complex tables, making implementation intuitive. Agents learn through reinforcement and punishment, considering context and consequences. They can also combine actions to create new behaviors.

video-behavior-tracking

Python package to track position, velocity, head direction from video for Loren Frank datasets

element-event

DataJoint Element for event-based behavior experiments

df3dpostprocessing

Postprocessing functions for DeepFly3D results

jasper

An asynchronous behavior-driven development framework.

bpod-modules-ibl

Python library for accessing Bpod modules used at IBL

sl-behavior

Provides tools for processing non-visual behavior data acquired in the Sun (NeuroAI) lab.