Behavior Analysis Python Packages

deeplabcut

Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans

mcpsafetywarden

MCP servers expose tools with no information about what they actually do at runtime. mcpsafetywarden sits between your agent and any MCP server, profiling tool behavior, blocking destructive calls, and running active security audits before you trust them in a workflow.

boris-behav-obs

Behavioral Observation Research Interactive Software

sleap

A deep learning framework for multi-animal pose tracking.

lightning-pose

Accelerated pose estimation and tracking using semi-supervised learning

us2deepposekit

a toolkit for pose estimation using deep learning

wormpose

WormPose: Image synthesis and convolutional networks for pose estimation in C. elegans

deeplabcut-docker

Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans

deepposekit

a toolkit for pose estimation using deep learning

flydra-analysis

live, low-latency markerless multi-camera 3D animal tracking system

flydra-core

live, low-latency markerless multi-camera 3D animal tracking system

deeplabcut-core

Headless DeepLabCut (no GUI support)

bsoid

Behavioral segmentation of open field in DeepLabCut, or B-SOID ("B-side"), is a pipeline that pairs unsupervised pattern recognition with supervised classification to achieve fast predictions of behaviors that are not predefined by users.