Behavior Analysis Python Packages

simba-uw-tf-dev

SimBA (Simple Behavioral Analysis): a pipeline and GUI for developing supervised behavioral classifiers from any major pose-estimation tool

deeplabcut

Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans

boris-behav-obs

Behavioral Observation Research Interactive Software

mcpsafetywarden

MCP servers expose tools with no information about what they actually do at runtime. mcpsafetywarden sits between your agent and any MCP server, profiling tool behavior, blocking destructive calls, and running active security audits before you trust them in a workflow.

sleap

A deep learning framework for multi-animal pose tracking.

simba-uw-tf

SimBA (Simple Behavioral Analysis): a pipeline and GUI for developing supervised behavioral classifiers from any major pose-estimation tool

simba-uw-no-tf

SimBA (Simple Behavioral Analysis): a pipeline and GUI for developing supervised behavioral classifiers from any major pose-estimation tool

lightning-pose

Accelerated 2D and 3D pose estimation using semi-supervised learning

deeplabcut-docker

Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans

flydra-analysis

live, low-latency markerless multi-camera 3D animal tracking system

deepposekit

a toolkit for pose estimation using deep learning

wormpose

WormPose: Image synthesis and convolutional networks for pose estimation in C. elegans

flydra-core

live, low-latency markerless multi-camera 3D animal tracking system

deeplabcut-core

Headless DeepLabCut (no GUI support)

us2deepposekit

a toolkit for pose estimation using deep learning