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Behavior Analysis Python Packages

Python packages with the GitHub topic behavior-analysis. Sorted by relevance, with stars and monthly downloads.
DeepLabCut
deeplabcut

Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans

17K 6K 2K
gautamvarmadatla
mcpsafetywarden

MCP servers expose tools with no information about what they actually do at runtime. mcpsafetywarden sits between your agent and any MCP server, profiling tool behavior, blocking destructive calls, and running active security audits before you trust them in a workflow.

11K 6 1
olivierfriard
boris-behav-obs

Behavioral Observation Research Interactive Software

10K 235 54
talmolab
sleap

A deep learning framework for multi-animal pose tracking.

5K 580 127
paninski-lab
lightning-pose

Accelerated pose estimation and tracking using semi-supervised learning

3K 298 51
jgraving
us2deepposekit

a toolkit for pose estimation using deep learning

762 406 88
iteal
wormpose

WormPose: Image synthesis and convolutional networks for pose estimation in C. elegans

433 56 19
DeepLabCut
deeplabcut-docker

Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans

423 6K 2K
jgraving
deepposekit

a toolkit for pose estimation using deep learning

419 406 88
strawlab
flydra-analysis

live, low-latency markerless multi-camera 3D animal tracking system

350 64 17
strawlab
flydra-core

live, low-latency markerless multi-camera 3D animal tracking system

247 64 17
DeepLabCut
deeplabcut-core

Headless DeepLabCut (no GUI support)

129 30 14
YttriLab
bsoid

Behavioral segmentation of open field in DeepLabCut, or B-SOID ("B-side"), is a pipeline that pairs unsupervised pattern recognition with supervised classification to achieve fast predictions of behaviors that are not predefined by users.

2 208 59
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