Bdf Toolbox Python Packages

synapseclient

Programmatic interface to Synapse services for Python

cumulus-library

A framework for designing, executing, and distributing SQL queries packaged as "studies", e.g., for quality monitoring, clinical research, or public health

gilda

Grounding of biomedical named entities with contextual disambiguation

cumulus-etl

Extract FHIR data, Transform with NLP and DEID tools, and then Load FHIR data into a SQL Database for analysis

dicom-dre

DICOM De-identification and redaction engine

gilda-slim

Grounding of biomedical named entities with contextual disambiguation

cumulus-library-data-metrics

A data metrics study for the Cumulus project

smart-fetch

Extract FHIR data from your EHR easily and completely

bdi-kit

A toolkit for biomedical data integration and harmonization

netrias-client

A python library that will be added to pypi that makes it easy to call Netrias harmonization capabilities.

cumulus-library-umls

A Unified Medical Language System® Metathesaurus study for the Cumulus project

magneto-python

[VLDB '25] Magneto combines small and large language models to provide cost-effective schema matching.

midrc-melody

MIDRC MELODY is a tool designed to assess the performance and subgroup-level reliability and robustness of AI models developed for medical imaging analysis tasks, such as the estimation of disease severity

cumulus-library-catalog

Browse hierarchies of pre-calculated counts for ICD10 Diagnosis, MEDRT/RxNorm medications, etc.

cumulus-library-kidney-transplant

kidney transplant irAE (immuno related adverse events) related to immunosuppressive Medications post transplant

bdi-viz

bdi-viz library