Bdf Toolbox Python Packages

synapseclient

Programmatic interface to Synapse services for Python

gilda

Grounding of biomedical named entities with contextual disambiguation

cumulus-etl

Extract FHIR data, Transform with NLP and DEID tools, and then Load FHIR data into a SQL Database for analysis

cumulus-library

A framework for designing, executing, and distributing SQL queries packaged as "studies", e.g., for quality monitoring, clinical research, or public health

netrias-client

A python library that will be added to pypi that makes it easy to call Netrias harmonization capabilities.

gilda-slim

Grounding of biomedical named entities with contextual disambiguation

cumulus-library-data-metrics

A data metrics study for the Cumulus project

smart-fetch

Extract FHIR data from your EHR easily and completely

bdi-kit

A toolkit for biomedical data integration and harmonization

cumulus-library-kidney-transplant

kidney transplant irAE (immuno related adverse events) related to immunosuppressive Medications post transplant

cumulus-library-catalog

Catalog hierarchies for Dx, Rx, Labs, and other FHIR resource types

magneto-python

Magneto Python library

cumulus-library-umls

A Unified Medical Language System® Metathesaurus study for the Cumulus project

midrc-melody

MIDRC MELODY is a tool designed to assess the performance and subgroup-level reliability and robustness of AI models developed for medical imaging analysis tasks, such as the estimation of disease severity

bdi-viz

bdi-viz library