PyRank

Basecalling Python Packages

Python packages with the GitHub topic basecalling. Sorted by monthly downloads, with stars and forks.
nanoporetech
ont-bonito

A PyTorch Basecaller for Oxford Nanopore Reads

763 435 144
nanoporetech
megalodon

Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.

532 205 27
nanoporetech
ont-remora

Methylation/modified base calling separated from basecalling.

457 190 29
nanoporetech
pyguppyclient

Python client library for Guppy

139 32 6
nanoporetech
ont-bonito-cuda111

A PyTorch Basecaller for Oxford Nanopore Reads

113 435 144
JMencius
epg-longbow

Basecalling configuration prediction from FASTQ files

100 34 3
nanoporetech
ont-bonito-cuda113

A PyTorch Basecaller for Oxford Nanopore Reads

73 435 144