PyRank

Basecalling Python Packages

Python packages with the GitHub topic basecalling. Sorted by relevance, with stars and monthly downloads.
nanoporetech
ont-remora

Methylation/modified base calling separated from basecalling.

1K 188 28
nanoporetech
ont-bonito

A PyTorch Basecaller for Oxford Nanopore Reads

652 435 139
nanoporetech
megalodon

Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.

609 204 27
nanoporetech
pyguppyclient

No description available

219 32 6
nanoporetech
ont-bonito-cuda111

A PyTorch Basecaller for Oxford Nanopore Reads

182 435 139
JMencius
epg-longbow

A Python program for nanopore sequencing basecalling configuration prediction

169 33 3
nanoporetech
ont-bonito-cuda113

A PyTorch Basecaller for Oxford Nanopore Reads

139 435 139