bacterial-genomics
Fast genome comparison with Mash, from assemblies or reads: distance matrix, UPGMA/NJ/ME trees with bootstrap support, and interactive PCoA
MobiOrigin classifies bacterial contigs as plasmid, chromosome, phage, or unclassified using sequence, coding and mobility-marker evidence.
Dependency-free identification of branch-associated SNVs from rooted phylogenies and transposed NEXUS matrices.
Machine learning-based secretion system annotation tool
🧬🍏✨ Graph-aware contextual annotation of targeted genomic features.
