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Bacterial Genomes Python Packages

Python packages with the GitHub topic bacterial-genomes. Sorted by relevance, with stars and monthly downloads.
oschwengers
bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

3K 642 79
scbirlab
crispio

Designing CRISPR-Cas guide RNAs in bacteria.

1K 0 1
milnus
magphi

Tool intended to pull out sequences and annotations between insertion sites specified by the user.

720 13 3
liaoherui
strainscan

One efficient and accurate strain-level microbiome composition analysis tool based on reference genomes and k-mers.

337 43 7
xpolak37
cogor

Package for improving the functional annotation of bacterial genomes, classification of protein-coding sequences into clusters of orthologous groups, and visualization of the final annotated genome.

298 0 0
jordanlab
stringmlst

Fast k-mer based tool for multi locus sequence typing (MLST)

269 46 8
gem-pasteur
integron-finder

MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.

208 77 16
telatin
nomenclator

📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria

153 41 6
bu-isciii
taranys

cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch.

65 9 6
    • Data from PyPI, GitHub, ClickHouse, and BigQuery