Bacterial Genome Analysis Python Packages

chewbbaca

BSR-Based Allele Calling Algorithm

amira-amr

A tool to detect acquired AMR genes directly from long read sequencing data.

chewbbaca-nserver

BSR-Based Allele Calling Algorithm

xlassify

An alignment-free deep-learning model trained to classify human gut bacteria

orcapy

Origin of Chromosomal Replication Assessment. Python tool for the analysis of circular bacterial DNA sequences in order to find their origin of replication.