Bacterial Genome Analysis Python Packages

chewbbaca

BSR-Based Allele Calling Algorithm

amira-amr

A tool to detect acquired AMR genes directly from long read sequencing data.

chewbbaca-nserver

BSR-Based Allele Calling Algorithm

xlassify

An alignment-free deep-learning model trained to classify human gut bacteria

orcapy

Tool for predicting the origin of replication on circular bacterial chromosomes