Average Nucleotide Identity Python Packages

pyani

Application and Python module for average nucleotide identity analyses of microbes.

pyfastani

Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.

pyskani

PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.

pyani-plus

Development repo for pyani-plus (the next iteration of pyani)

vclust

Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes

orthoani

A Python implementation of the OrthoANI algorithm for nucleotide identity measurement. (renamed to pyorthoani)

btyper3

In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data

pyorthoani

A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.