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Average Nucleotide Identity Python Packages

Python packages with the GitHub topic average-nucleotide-identity. Sorted by relevance, with stars and monthly downloads.
widdowquinn
pyani

Application and Python module for average nucleotide identity analyses of microbes.

3K 217 56
althonos
pyfastani

Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.

3K 24 2
althonos
pyskani

PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.

2K 29 2
pyani-plus
pyani-plus

Development repo for pyani-plus (the next iteration of pyani)

774 33 2
refresh-bio
vclust

Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes

320 108 4
althonos
orthoani

A Python implementation of the OrthoANI algorithm for nucleotide identity measurement. (renamed to pyorthoani)

298 36 4
lmc297
btyper3

In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data

206 23 0
althonos
pyorthoani

A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.

163 36 4
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