Average Nucleotide Identity Python Packages

pyfastani

Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.

pyskani

PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.

pyani

Application and Python module for average nucleotide identity analyses of microbes.

pyani-plus

Development repo for pyani-plus (the next iteration of pyani)

orthoani

A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.

vclust

Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes

btyper3

In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data

pyorthoani

A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.

zani

🧬🗜️🤪 Zstandard-based Average Nucleotide Identity (ANI).