Atoms Python Packages

rmsd

Calculate Root-mean-square deviation (RMSD) of two molecules, using rotation, in xyz or pdb format

batoms

Python module for drawing and rendering beautiful atoms and molecules using Blender.

contactextractor

Contact Extractor from PDB/mmCIF coordinate files

libquantum

Standardized Gabor atom representations with minimal time-frequency uncertainty.

imd-cookie-cutter

A tool for removing atoms in IMD config files, just like a cookie cutter in higher dimensions