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Antibiotic Resistance Python Packages

Python packages with the GitHub topic antibiotic-resistance. Sorted by relevance, with stars and monthly downloads.
caozhichongchong
arg-ranker

Ranking the risk of antibiotic resistance for genomes/metagenomes

1K 37 12
BigDataBiology
argnorm

ARG normalization by mapping to the ARO ontology.

694 65 10
ryansmcgee
pycrobe

A simple package for simulations of microbial growth experiments with realistic sources of error.

210 1 2
althonos
pyabricate

Pure Python port and interface to ABRicate, a tool for mass screening of contigs for antimicrobial resistance or virulence genes.

74 2 0
pianpianyouche
plascad

Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasmid visualization.

73 52 13
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