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Antibiotic Resistance Python Packages

Python packages with the GitHub topic antibiotic-resistance. Sorted by monthly downloads, with stars and forks.
caozhichongchong
arg-ranker

Ranking the risk of antibiotic resistance for genomes/metagenomes

585 39 12
BigDataBiology
argnorm

ARG normalization by mapping to the ARO ontology.

443 70 10
ryansmcgee
pycrobe

A simple package for simulations of microbial growth experiments with realistic sources of error.

142 1 2
althonos
pyabricate

Pure Python port and interface to ABRicate, a tool for mass screening of contigs for antimicrobial resistance or virulence genes.

64 3 0
pianpianyouche
plascad

Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasmid visualization.

50 52 12
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