Anatomy Python Packages

brainrender

A Python package to visualise neuroanatomical data in atlas space

navis

Python library for analysis of neuroanatomical data.

python-catmaid

Python library to interface with CATMAID servers. Fully interoperable with navis.

guava-rt

A geometrical upright-supine anatomical variation analysis framework

shoulder

Landmark detection and humeral implant positioning with lightweight machine learning models.

brainreg-napari

Automated 3D brain registration in napari with support for multiple species and atlases.

freesurfer-stats

Python Library to Read FreeSurfer's Cortical Parcellation Anatomical Statistics

brainrender-test

Python scripts to use Allen Brain Map data for analysis and rendering