Amr Python Packages

amr

Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by using evidence-based methods, as described in https://doi.org/10.18637/jss.v104.i03.

penman

PENMAN notation (e.g. AMR) in Python

peclet-core

Shared infrastructure for the Peclet suite: MPI block decomposition, async ghost-layer exchange, SDF geometry, dynamic load balancing, AMR octree (header-only C++20 + Kokkos)

maldiamrkit

Comprehensive toolkit for MALDI-TOF mass spectrometry data preprocessing for antimicrobial resistance (AMR) prediction purposes

peclet-halo

Shared infrastructure for the Peclet suite: MPI block decomposition, async ghost-layer exchange, SDF geometry, dynamic load balancing, AMR octree (header-only C++20 + Kokkos)

kachaka-sdk-toolkit

Python SDK toolkit for Kachaka autonomous mobile robots (AMR) — pooled connections, auto-retry, camera streaming, object detection, patrol control. PyPI: kachaka-sdk-toolkit. By Sigma Robotics 西格瑪機器人

respredai

Implementation of the pipeline described in the work "Artificial intelligence model to predict resistances in Gram-negative bloodstream infections" by Bonazzetti et al., npj Digit. Med. 8, 319 (2025)

amrlib

A python library that makes AMR parsing, generation and visualization simple.

perin-parser

PERIN is Permutation-Invariant Semantic Parser developed for MRP 2020

dna-decode

Deterministic, interpretable genome→phenotype decoder: calls antibiotic/antiviral/antifungal resistance from DNA + names the exact genes/mutations driving each call. Spans bacteria, M. tuberculosis, fungi, HIV-1 & SARS-CoV-2 — independently validated on FREE measured wet-lab labels (EBI AMR Portal, Stanford HIVDB). Not a clinical tool.

smatchpp

A package for handy processing of semantic graphs and meaning representations, (e.g. AMR) with a special focus on standardized evaluation

maldideepkit

Catalog of sklearn-compatible deep learning classifiers for MALDI-TOF binned spectra

amr-logic-converter

Convert Abstract Meaning Representation (AMR) into first-order logic

maldisuite

MaldiSuite - a Python ecosystem for MALDI-TOF spectral processing and analysis in antimicrobial resistance research

bacant

This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.

amira-amr

A tool to detect acquired AMR genes directly from long read sequencing data.

zensols-amr

AMR annotation and feature generation

transition-neural-parser

SoTA Abstract Meaning Representation (AMR) parsing with word-node alignments in Pytorch. Includes checkpoints and other tools such as statistical significance Smatch.

maldibatchkit

Batch-effect correction methods for MALDI-TOF spectra in clinical AMR prediction workflows

splitfdm

1D Finite-Difference with AMR and steady-state solver using Newton and Split-Newton

splitfvm

1D Finite-Volume with AMR and steady-state solver using Newton and Split-Newton. 2k+ downloads

unofficial-stog

AMR Parsing as Sequence-to-Graph Transduction

iec62056-21

A Python library for IEC62056-21, Local Data Readout of Energy Meters. Former IEC1107

iec62056-21-dzg

A Python library for IEC62056-21, Local Data Readout of Energy Meters. Former IEC1107