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Amr Python Packages

Python packages with the GitHub topic amr. Sorted by relevance, with stars and monthly downloads.
msberends
amr

Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by using evidence-based methods, as described in https://doi.org/10.18637/jss.v104.i03.

28K 110 23
goodmami
penman

PENMAN notation (e.g. AMR) in Python

20K 150 28
bjascob
amrlib

A python library that makes AMR parsing, generation and visualization simple.

4K 267 41
EttoreRocchi
maldiamrkit

Comprehensive toolkit for MALDI-TOF mass spectrometry data preprocessing for antimicrobial resistance (AMR) prediction purposes

3K 3 1
EttoreRocchi
respredai

Antimicrobial Resistance predictions via AI models

1K 5 0
chanind
amr-logic-converter

Convert Abstract Meaning Representation (AMR) into first-order logic

1K 17 2
EttoreRocchi
maldideepkit

Catalog of sklearn-compatible deep learning classifiers for MALDI-TOF binned spectra

919 0 0
EttoreRocchi
maldibatchkit

Batch-effect correction methods for MALDI-TOF spectra in clinical AMR prediction workflows

903 1 0
flipz357
smatchpp

A package for handy processing of semantic graphs such as AMR, with a special focus on standardized evaluation

609 26 4
ufal
perin-parser

(Unofficial) PERIN: Permutation-invariant Semantic Parsing

511 45 7
xthua
bacant

This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.

483 21 7
EttoreRocchi
maldisuite

MaldiSuite - a Python ecosystem for MALDI-TOF spectral processing and analysis in antimicrobial resistance research

469 0 0
Danderson123
amira-amr

A tool to detect acquired AMR genes directly from long read sequencing data.

369 28 2
gpavanb1
splitfvm

1D Finite-Volume with AMR and steady-state solver using Newton and Split-Newton. 2k+ downloads

358 5 0
pwitab
iec62056-21

A Python library for IEC62056-21, Local Data Readout of Energy Meters. Former IEC1107

354 85 24
IBM
transition-neural-parser

SoTA Abstract Meaning Representation (AMR) parsing with word-node alignments in Pytorch. Includes checkpoints and other tools such as statistical significance Smatch.

347 272 56
gpavanb1
splitfdm

1D Finite-Difference with AMR and steady-state solver using Newton and Split-Newton

345 2 0
plandes
zensols-amr

AMR annotation and feature generation

266 2 1
sheng-z
unofficial-stog

Unofficial Package of AMR Parsing as Sequence-to-Graph Transduction

221 156 36
plandes
zensols-clinicamr

Clincial Domain Abstract Meaning Representation Graphs

207 0 0
adamdempsey90
ndtamr

N-dimensional adaptive mesh refinment tree structure in Python

119 18 6
pwitab
iec62056-21-dzg

A Python library for IEC62056-21, Local Data Readout of Energy Meters. Former IEC1107

86 85 24
plandes
zensols-alsum

ALignment SUMmarization

32 0 0
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