Amplicon Python Packages

catnip-seq

Explore nucleotide divergence and sequence resolution across user-defined categories.

crispresso

Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data

caltha

A python package to process UMI tagged mixed amplicon metabarcoding data.

amplicov

script to generate amplicon coverage plot

flextaxd

FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )