Alternative Splicing Python Packages

isoform-dominance

Is this functional isoform-class comparison measurable by short reads? Group-level identifiability, quantification and testing from bulk RNA-seq

spada

⚔️ Find splicing-led, functional changes of the proteome.

thoraxe

Use Thor's Axe to cut exons into their evolutionary building blocks :zap:

altanalyze3

AltAnalyze version 3 is a Python3 library to integrate and compare diverse RNA isoform datasets.

spycone

Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data

nease

A network-based approach for exon set enrichment

astk

Alternative Splicing ToolKit

transcriptorthology

Algorithm to infer clusters of isoorthologous transcripts using gene-level homology relationships and a Reciprocal Best Hits approach

yasim

Yet Another SIMulator for Alternative Splicing Events and Realistic Gene Expression Profile