Alphafold Python Packages

gget

🧬 gget enables efficient querying of genomic reference databases

alphafold-sovereign-mcp

Local-first biomedical MCP over AlphaFold DB + 8 public sources, with SQLite knowledge graph, offline mode, and explicit clinical-use limits.

uniprot-mcp-server

Auditable UniProt MCP server with per-response SHA-256 provenance, release pinning, verification, and offline replay.

alphafoldfetch

A tool for downloading AlphaFold structures using UniProt IDs or FASTA files

proteinfp

End-to-end protein function prediction from structure alone: active sites, binding pockets, GO terms, PPI partners, and drug candidates.

alphafold3

Paper - Pytorch

rafm

Reliable AlphaFold Measures

invariant-attention

An implementation of Invariant Point Attention from Alphafold 2

ensemblify

A Python package for generating ensembles of intrinsically disordered regions of AlphaFold or user defined models.

open-af3

Paper - Pytorch