Alphafold Python Packages

gget

🧬 gget enables efficient querying of genomic reference databases

uniprot-mcp-server

Model Context Protocol server for UniProt — Swiss-Prot and TrEMBL protein knowledgebase. 41 tools across 8 families with per-query SHA-256 provenance verification and offline replay.

proteinfp

End-to-end protein function prediction from structure alone: active sites, binding pockets, GO terms, PPI partners, and drug candidates.

alphafoldfetch

A tool for downloading AlphaFold structures using UniProt IDs or FASTA files

alphafold3

Paper - Pytorch

rafm

Reliable AlphaFold Measures

invariant-attention

An implementation of Invariant Point Attention from Alphafold 2

open-af3

Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch

ensemblify

Ensemblify is a computational tool that generates ensembles of intrinsically disordered regions from AlphaFold or user-defined models. It provides a user-friendly way to generate, analyze and reweight (against experimental data) ensembles, making it accessible to all members of the scientific community, independent of their programming expertise.