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Alphafold Python Packages

Python packages with the GitHub topic alphafold. Sorted by relevance, with stars and monthly downloads.
pachterlab
gget

🧬 gget enables efficient querying of genomic reference databases

37K 1K 85
smaniches
uniprot-mcp-server

Model Context Protocol server for UniProt — Swiss-Prot and TrEMBL protein knowledgebase. 41 tools across 8 families with per-query SHA-256 provenance verification and offline replay.

3K 2 0
wowcowdowjones
proteinfp

End-to-end protein function prediction from structure alone: active sites, binding pockets, GO terms, PPI partners, and drug candidates.

2K 4 0
mansanlab
alphafoldfetch

A tool for downloading AlphaFold structures using UniProt IDs or FASTA files

1K 9 2
kyegomez
alphafold3

Paper - Pytorch

495 804 104
joelb123
rafm

Reliable AlphaFold Measures

332 2 0
Rishit-dagli
invariant-attention

An implementation of Invariant Point Attention from Alphafold 2

142 6 0
kyegomez
open-af3

Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch

91 804 104
npfernandes
ensemblify

Ensemblify is a computational tool that generates ensembles of intrinsically disordered regions from AlphaFold or user-defined models. It provides a user-friendly way to generate, analyze and reweight (against experimental data) ensembles, making it accessible to all members of the scientific community, independent of their programming expertise.

90 3 3
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