Alignment Python Packages

pandas

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

facexlib

FaceXlib aims at providing ready-to-use face-related functions based on current STOA open-source methods.

dtwalign

Comprehensive dynamic time warping module for python

edit-distance

Python library for computing edit distance between arbitrary Python sequences.

scikit-fda

Functional Data Analysis Python package

pafpy

A lightweight library for working with PAF (Pairwise mApping Format) files

rmsd

Calculate Root-mean-square deviation (RMSD) of two molecules, using rotation, in xyz or pdb format

ffsubsync

Automagically synchronize subtitles with video.

astroalign

A tool to align astronomical images based on asterism matching

thingsvision

Python package for extracting representations from state-of-the-art computer vision models

py-openjudge

OpenJudge: A Unified Framework for Holistic Evaluation and Quality Rewards

aeneas

aeneas is a Python/C library and a set of tools to automagically synchronize audio and text (aka forced alignment)

pyspoa

Python bindings to spoa

genomeworks-cuda-10-0

SDK for GPU accelerated genome assembly and analysis

genomeworks-cuda-10-1

SDK for GPU accelerated genome assembly and analysis

trajectopy

Trajectopy - Trajectory Evaluation in Python

prose-formatter

A Python typesetter for the reader.

pypar

Phoneme alignment representation compatible with multiple forced aligners

visualqc

Assistive tool for the quality control of neuroimaging data

minineedle

Needleman-Wunsch and Smith-Waterman algorithms in python

carl-studio

Coherence-Aware Reinforcement Learning (CARL) - breakthrough LLM post-training and test-time training paradigm. carl builds the world's most advanced and intelligent agent systems that are a step change over current gen agents

pywfa

Python wrapper for wavefront alignment using WFA2-lib

subaligner

Automatically synchronize and translate subtitles, or create new ones by transcribing, using pre-trained DNNs, Forced Alignments and Transformers. https://subaligner.readthedocs.io/

agent-alignment-protocol

Agent Alignment Protocol — the missing trust layer for the agent stack