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Alignment Free Python Packages

Python packages with the GitHub topic alignment-free. Sorted by relevance, with stars and monthly downloads.
IQTLabs
librtd

Generalized k-mer return time distribution (RTD) calculation library

451 5 1
TurtleTools
geometricus

A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.

370 41 12
SenseTime-Knowledge-Mining
xlassify

An alignment-free deep-learning model trained to classify human gut bacteria

209 1 0
CNuge
alfie

A neural network for alignment-free, kingdom-level classification of eDNA

143 7 3
raghavagps
transfacpred

A method to predict the transcription factors using protein sequences.

52 6 2
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