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Alignment Free Python Packages

Python packages with the GitHub topic alignment-free. Sorted by relevance, with stars and monthly downloads.
TurtleTools
geometricus

A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.

463 41 11
IQTLabs
librtd

Generalized k-mer return time distribution (RTD) calculation library

454 5 1
SenseTime-Knowledge-Mining
xlassify

An alignment-free deep-learning model trained to classify human gut bacteria

169 1 0
CNuge
alfie

alignment free identification of edna

156 7 3
raghavagps
transfacpred

An ensemble method for predicting transcription factor in protein sequences

104 6 2
    • Data from PyPI, GitHub, ClickHouse, and BigQuery