airr
A scanpy extension to analyse single-cell TCR and BCR data.
Alignment-free graph models of TCR and BCR repertoires built from Lempel-Ziv and FlashBack string decompositions. Compute sequence generation probability (Pgen) and repertoire diversity, and generate new sequences. Python with a C core.
immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
An UMI-tagged sequencing swiss-knife. Built for amplicon sequencing of immune repertoires, ctDNA and rare mutations, single-cell sequencing.
LIgO is a tool for simulation of adaptive immune receptors and repertoires.
Python package to embed BCR and TCR sequences
Decombinator: fast, error-correcting analysis of TCR repertoires
