3d Images Python Packages

connected-components-3d

Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

porespy

A set of tools for characterizing and analyzing 3D images of porous materials

pygorpho

Python library for fast 3D mathematical morphology using CUDA

biom3d

Easy Volumetric Segmentation with Deep Learning

chunkflow

Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation

warpfield

GPU-based 3D non-rigid volumetric registration

mriaug

Augment 3D images (e.g. MRIs) in PyTorch 🔥

vesselknit

Connectivity-preserving voxelization of vessel STL meshes into NIfTI masks.