PyRank

16s Python Packages

Python packages with the GitHub topic 16s. Sorted by relevance, with stars and monthly downloads.
pnnl
hundo

:100: Snakemake-based amplicon processing protocol for 16S and ITS sequences.

722 13 6
erinyoung
spestimator

A tool to predict bacterial species from fasta files using RefSeq 16S.

539 0 0
smdabdoub
qiime-tools

Tools for phylogenetic data analysis including visualization and cluster-computing support.

125 15 3
dizak
mothulity

Easy-to-use tool facilitating work with Mothur.

115 3 3
FOI-Bioinformatics
flextaxd

FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )

88 67 8
smdabdoub
phylotoast

Tools for phylogenetic data analysis including visualization and cluster-computing support.

65 15 3
SushiLab
mtags

mTAGs - taxonomic profiling using degenerate consensus reference sequences of ribosomal RNA gene.

61 6 2