Downloads in the 30 and 7 days to October 10, 2026. Refreshed weekly.
Package Information
No reported malware or high/critical advisories · Details
The current version has no OSV.dev malware reports and no critical or high-severity vulnerabilities.
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Dependencies
- cutadapt >=4.0
- dnaio >=1.2
- matplotlib >=3.8
- numpy >=1.24
- pandas >=2.0
- pyarrow >=14.0
- pydantic >=2.0
- pyyaml >=6.0
- requests >=2.31
- typer >=0.12
18 optional dependencies
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biopython>=1.82[ncbi]extra == "ncbi"
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build[dev]extra == "dev"
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ipykernel[dev]extra == "dev"
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mkdocs-material>=9.5[docs]extra == "docs"
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mkdocstrings>=0.25[docs]extra == "docs"
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mypy[dev]extra == "dev"
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nbconvert[dev]extra == "dev"
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pre-commit[dev]extra == "dev"
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pulp<2.8[bench]extra == "bench"
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pyfastx>=2.0[fast]extra == "fast"
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pysradb>=2.2[ncbi]extra == "ncbi"
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pytest>=7.0[dev]extra == "dev"
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pytest-cov[dev]extra == "dev"
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ruff[dev]extra == "dev"
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snakemake<8,>=7.0[bench]extra == "bench"
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twine[dev]extra == "dev"
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types-pyyaml[dev]extra == "dev"
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types-requests[dev]extra == "dev"